Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae; x__Vibrio cholerae HC-59A1
NCBI Strain Identifiers HC-59A1
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001471585.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.05%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 18
Contig Count 160
N50 Contigs 87,933 bp
Longest Contig 185,557 bp
Scaffold Count 114
N50 Scaffolds 107,228 bp
Longest Scaffold 348,267 bp
Genome Size 3,934,654 bp
Protein Count 3,527
Coding Density 87.22%
GC Percentage 47.78%
Ambiguous Bases N/A
GTDB representative GCA_001471585.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM30519v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN00715107
Country Haiti
Date 2012-10-31
Genbank Assembly Accession GCA_000305195.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source stool
Latitude Longitude None
Molecule Count N/A
CDS Count 3,688
Refseq Category na
Seq Rel Date 2012/10/31
Spanned Gaps 46
Species Taxid 666
SSU Count 1
Submitter Institute for Genome Sciences
Taxid 991977
Total Gap Length 1525
Translation Table 11
tRNA Count (total) 73
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AJRS00000000.1