Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae; x__Vibrio cholerae HE-40
NCBI Strain Identifiers HE-40
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001471585.2)
Genome Characteristics
CheckM Completeness 99.98%
CheckM Contamination 0.03%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 3
23S Count 2
tRNA Count 20
Contig Count 122
N50 Contigs 101,657 bp
Longest Contig 232,351 bp
Scaffold Count 102
N50 Scaffolds 142,254 bp
Longest Scaffold 414,096 bp
Genome Size 3,875,898 bp
Protein Count 3,439
Coding Density 87.43%
GC Percentage 47.69%
Ambiguous Bases N/A
GTDB representative GCA_001471585.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM30511v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN00722741
Country Haiti
Date 2012-10-31
Genbank Assembly Accession GCA_000305115.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source hospital latrine
Latitude Longitude None
Molecule Count N/A
CDS Count 3,584
Refseq Category na
Seq Rel Date 2012/10/31
Spanned Gaps 20
Species Taxid 666
SSU Count 3
Submitter Institute for Genome Sciences
Taxid 992000
Total Gap Length 942
Translation Table 11
tRNA Count (total) 88
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AJRX00000000.1