Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae; x__Vibrio cholerae HC-62A1
NCBI Strain Identifiers HC-62A1
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001471585.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.03%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 126
N50 Contigs 155,020 bp
Longest Contig 392,943 bp
Scaffold Count 105
N50 Scaffolds 197,804 bp
Longest Scaffold 573,345 bp
Genome Size 4,032,880 bp
Protein Count 3,581
Coding Density 87.53%
GC Percentage 47.49%
Ambiguous Bases N/A
GTDB representative GCA_001471585.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM30507v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN00722988
Country Haiti
Date 2012-10-31
Genbank Assembly Accession GCA_000305075.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source stool
Latitude Longitude None
Molecule Count N/A
CDS Count 3,782
Refseq Category na
Seq Rel Date 2012/10/31
Spanned Gaps 21
Species Taxid 666
SSU Count 2
Submitter Institute for Genome Sciences
Taxid 992006
Total Gap Length 818
Translation Table 11
tRNA Count (total) 81
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AJRV00000000.1