Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae; x__Vibrio cholerae HC-17A1
NCBI Strain Identifiers HC-17A1
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001471585.2)
Genome Characteristics
CheckM Completeness 99.86%
CheckM Contamination 0.77%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 8
23S Count 5
tRNA Count 20
Contig Count 527
N50 Contigs 80,262 bp
Longest Contig 260,821 bp
Scaffold Count 405
N50 Scaffolds 172,656 bp
Longest Scaffold 574,298 bp
Genome Size 4,174,355 bp
Protein Count 3,904
Coding Density 86.27%
GC Percentage 47.24%
Ambiguous Bases N/A
GTDB representative GCA_001471585.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM30493v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN00722973
Country Haiti
Date 2012-10-31
Genbank Assembly Accession GCA_000304935.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source stool
Latitude Longitude None
Molecule Count N/A
CDS Count 4,105
Refseq Category na
Seq Rel Date 2012/10/31
Spanned Gaps 122
Species Taxid 666
SSU Count 12
Submitter Institute for Genome Sciences
Taxid 991951
Total Gap Length 9743
Translation Table 11
tRNA Count (total) 84
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AJRN00000000.1