Escherichia dysenteriae
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia dysenteriae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli 8.0416
NCBI Strain Identifiers 8.0416
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002949675.1)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.43%
CheckM Strain Heterogeneity 33.33
5S Count 7
16S Count 2
23S Count 5
tRNA Count 18
Contig Count 244
N50 Contigs 109,779 bp
Longest Contig 311,345 bp
Scaffold Count 244
N50 Scaffolds 109,779 bp
Longest Scaffold 311,345 bp
Genome Size 5,394,166 bp
Protein Count 5,322
Coding Density 87.92%
GC Percentage 50.26%
Ambiguous Bases 1
GTDB representative GCA_002949675.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM30483v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN01036880
Country USA
Date 2012-10-10
Genbank Assembly Accession GCA_000304835.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source processed meat
Latitude Longitude None
Molecule Count N/A
CDS Count 5,769
Refseq Category na
Seq Rel Date 2012/10/10
Spanned Gaps 0
Species Taxid 562
SSU Count 2
Submitter Institute for Genome Sciences
Taxid 1005463
Total Gap Length 0
Translation Table 11
tRNA Count (total) 82
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AMTN00000000.1