Escherichia dysenteriae
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia dysenteriae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli 3.4870
NCBI Strain Identifiers 3.4870
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002949675.1)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.33%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 2
23S Count 3
tRNA Count 19
Contig Count 426
N50 Contigs 99,691 bp
Longest Contig 311,469 bp
Scaffold Count 357
N50 Scaffolds 126,901 bp
Longest Scaffold 374,915 bp
Genome Size 5,338,164 bp
Protein Count 5,321
Coding Density 87.43%
GC Percentage 50.28%
Ambiguous Bases N/A
GTDB representative GCA_002949675.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM30481v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN01036685
Country USA
Date 2012-11-1
Genbank Assembly Accession GCA_000304815.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,790
Refseq Category na
Seq Rel Date 2012/11/01
Spanned Gaps 69
Species Taxid 562
SSU Count 3
Submitter Institute for Genome Sciences
Taxid 1005450
Total Gap Length 1830
Translation Table 11
tRNA Count (total) 85
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AMTD00000000.1