Treponema pallidum
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Spirochaetota; c__Spirochaetia; o__Treponematales; f__Treponemataceae; g__Treponema; s__Treponema pallidum
Filtered NCBI Taxonomy d__Bacteria; p__Spirochaetes; c__Spirochaetia; o__Spirochaetales; f__Spirochaetaceae; g__Treponema; s__Treponema pallidum
Unfiltered NCBI Taxonomy d__Bacteria; p__Spirochaetes; c__Spirochaetia; o__Spirochaetales; f__Spirochaetaceae; g__Treponema; s__Treponema pallidum; sb__Treponema pallidum subsp. pallidum; x__Treponema pallidum subsp. pallidum str. Mexico A
NCBI Strain Identifiers Mexico A
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000410535.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 2
23S Count 2
tRNA Count 20
Contig Count 7
N50 Contigs 976,470 bp
Longest Contig 976,470 bp
Scaffold Count 1
N50 Scaffolds 1,140,038 bp
Longest Scaffold 1,140,038 bp
Genome Size 1,140,038 bp
Protein Count 984
Coding Density 92.42%
GC Percentage 52.80%
Ambiguous Bases N/A
GTDB representative GCA_000410535.2
GTDB representative of species False
NCBI Metadata
Assembly Level Chromosome
Assembly Name ASM30429v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN00004588
Country None
Date 2012-10-9
Genbank Assembly Accession GCA_000304295.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count 1
CDS Count 1,011
Refseq Category na
Seq Rel Date 2012/10/09
Spanned Gaps 6
Species Taxid 160
SSU Count 2
Submitter Baylor College of Medicine
Taxid 686990
Total Gap Length 324
Translation Table 11
tRNA Count (total) 45
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master None