Escherichia dysenteriae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia dysenteriae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli 5412
NCBI Strain Identifiers 5412
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002949675.1)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.33%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 2
23S Count 2
tRNA Count 20
Contig Count 415
N50 Contigs 98,924 bp
Longest Contig 221,259 bp
Scaffold Count 372
N50 Scaffolds 121,451 bp
Longest Scaffold 411,531 bp
Genome Size 5,381,042 bp
Protein Count 5,386
Coding Density 87.47%
GC Percentage 50.34%
Ambiguous Bases N/A
GTDB representative GCA_002949675.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM30405v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02435973
Country Germany
Date 2012-10-12
Genbank Assembly Accession GCA_000304055.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,857
Refseq Category na
Seq Rel Date 2012/10/12
Spanned Gaps 43
Species Taxid 562
SSU Count 2
Submitter Institute for Genome Sciences
Taxid 1005561
Total Gap Length 2967
Translation Table 11
tRNA Count (total) 87
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AMUJ00000000.1