Escherichia dysenteriae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia dysenteriae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli PA45
NCBI Strain Identifiers PA45
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002949675.1)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.33%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 2
23S Count 2
tRNA Count 20
Contig Count 452
N50 Contigs 145,492 bp
Longest Contig 353,251 bp
Scaffold Count 424
N50 Scaffolds 157,878 bp
Longest Scaffold 505,960 bp
Genome Size 5,396,846 bp
Protein Count 5,426
Coding Density 87.42%
GC Percentage 50.31%
Ambiguous Bases N/A
GTDB representative GCA_002949675.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM30393v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN00794588
Country USA
Date 2012-10-12
Genbank Assembly Accession GCA_000303935.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,899
Refseq Category na
Seq Rel Date 2012/10/12
Spanned Gaps 28
Species Taxid 562
SSU Count 4
Submitter Institute for Genome Sciences
Taxid 1005511
Total Gap Length 1928
Translation Table 11
tRNA Count (total) 94
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AMUD00000000.1