Escherichia dysenteriae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia dysenteriae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli FRIK1999
NCBI Strain Identifiers FRIK1999
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002949675.1)
Genome Characteristics
CheckM Completeness 99.92%
CheckM Contamination 0.33%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 2
23S Count 1
tRNA Count 20
Contig Count 479
N50 Contigs 123,084 bp
Longest Contig 256,941 bp
Scaffold Count 419
N50 Scaffolds 145,374 bp
Longest Scaffold 461,793 bp
Genome Size 5,424,837 bp
Protein Count 5,492
Coding Density 87.28%
GC Percentage 50.26%
Ambiguous Bases N/A
GTDB representative GCA_002949675.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM30377v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN00794579
Country USA
Date 2012-10-12
Genbank Assembly Accession GCA_000303775.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,969
Refseq Category na
Seq Rel Date 2012/10/12
Spanned Gaps 60
Species Taxid 562
SSU Count 2
Submitter Institute for Genome Sciences
Taxid 1005477
Total Gap Length 4284
Translation Table 11
tRNA Count (total) 90
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AMTV00000000.1