Escherichia dysenteriae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia dysenteriae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli PA34
NCBI Strain Identifiers PA34
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002949675.1)
Genome Characteristics
CheckM Completeness 99.87%
CheckM Contamination 0.33%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 2
23S Count 2
tRNA Count 20
Contig Count 391
N50 Contigs 115,828 bp
Longest Contig 368,323 bp
Scaffold Count 354
N50 Scaffolds 133,275 bp
Longest Scaffold 374,904 bp
Genome Size 5,381,144 bp
Protein Count 5,353
Coding Density 87.42%
GC Percentage 50.29%
Ambiguous Bases N/A
GTDB representative GCA_002949675.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM30369v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN00794575
Country USA
Date 2012-10-12
Genbank Assembly Accession GCA_000303695.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,826
Refseq Category na
Seq Rel Date 2012/10/12
Spanned Gaps 37
Species Taxid 562
SSU Count 2
Submitter Institute for Genome Sciences
Taxid 1005505
Total Gap Length 2139
Translation Table 11
tRNA Count (total) 90
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AMTR00000000.1