Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli 07798
NCBI Strain Identifiers 07798
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003697165.2)
Genome Characteristics
CheckM Completeness 99.77%
CheckM Contamination 0.04%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 248
N50 Contigs 157,587 bp
Longest Contig 438,203 bp
Scaffold Count 224
N50 Scaffolds 201,583 bp
Longest Scaffold 438,203 bp
Genome Size 4,904,373 bp
Protein Count 4,859
Coding Density 87.59%
GC Percentage 50.58%
Ambiguous Bases N/A
GTDB representative GCA_003697165.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM30365v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN00808699
Country Argentina
Date 2012-10-12
Genbank Assembly Accession GCA_000303655.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,240
Refseq Category na
Seq Rel Date 2012/10/12
Spanned Gaps 24
Species Taxid 562
SSU Count 3
Submitter Institute for Genome Sciences
Taxid 1005566
Total Gap Length 1974
Translation Table 11
tRNA Count (total) 89
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AMUP00000000.1