Escherichia flexneri
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli N1
NCBI Strain Identifiers N1
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.62%
CheckM Contamination 0.26%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 2
23S Count 5
tRNA Count 20
Contig Count 333
N50 Contigs 80,761 bp
Longest Contig 208,963 bp
Scaffold Count 304
N50 Scaffolds 91,303 bp
Longest Scaffold 294,688 bp
Genome Size 4,959,494 bp
Protein Count 4,755
Coding Density 87.51%
GC Percentage 50.53%
Ambiguous Bases N/A
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM30363v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN00808700
Country None
Date 2012-10-12
Genbank Assembly Accession GCA_000303635.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source beef
Latitude Longitude None
Molecule Count N/A
CDS Count 5,107
Refseq Category na
Seq Rel Date 2012/10/12
Spanned Gaps 29
Species Taxid 562
SSU Count 2
Submitter Institute for Genome Sciences
Taxid 1005567
Total Gap Length 1676
Translation Table 11
tRNA Count (total) 74
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AMUQ00000000.1