Escherichia dysenteriae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia dysenteriae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli EC1850
NCBI Strain Identifiers EC1850
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002949675.1)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.04%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 2
23S Count 2
tRNA Count 20
Contig Count 456
N50 Contigs 114,742 bp
Longest Contig 368,761 bp
Scaffold Count 393
N50 Scaffolds 121,964 bp
Longest Scaffold 391,346 bp
Genome Size 5,372,588 bp
Protein Count 5,398
Coding Density 87.33%
GC Percentage 50.28%
Ambiguous Bases N/A
GTDB representative GCA_002949675.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM30347v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN00808709
Country USA
Date 2012-10-12
Genbank Assembly Accession GCA_000303475.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,865
Refseq Category na
Seq Rel Date 2012/10/12
Spanned Gaps 63
Species Taxid 562
SSU Count 2
Submitter Institute for Genome Sciences
Taxid 1005545
Total Gap Length 3335
Translation Table 11
tRNA Count (total) 94
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AMUY00000000.1