Escherichia dysenteriae
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia dysenteriae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli EC1869
NCBI Strain Identifiers EC1869
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002949675.1)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.33%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 2
23S Count 2
tRNA Count 19
Contig Count 464
N50 Contigs 133,271 bp
Longest Contig 346,360 bp
Scaffold Count 410
N50 Scaffolds 147,493 bp
Longest Scaffold 374,922 bp
Genome Size 5,405,121 bp
Protein Count 5,438
Coding Density 87.36%
GC Percentage 50.26%
Ambiguous Bases N/A
GTDB representative GCA_002949675.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM30333v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN00808716
Country USA
Date 2012-10-12
Genbank Assembly Accession GCA_000303335.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,929
Refseq Category na
Seq Rel Date 2012/10/12
Spanned Gaps 54
Species Taxid 562
SSU Count 2
Submitter Institute for Genome Sciences
Taxid 1005553
Total Gap Length 2177
Translation Table 11
tRNA Count (total) 93
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AMVF00000000.1