Escherichia dysenteriae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia dysenteriae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli EC1870
NCBI Strain Identifiers EC1870
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002949675.1)
Genome Characteristics
CheckM Completeness 99.89%
CheckM Contamination 0.33%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 2
23S Count 2
tRNA Count 20
Contig Count 541
N50 Contigs 109,209 bp
Longest Contig 347,196 bp
Scaffold Count 465
N50 Scaffolds 140,544 bp
Longest Scaffold 374,865 bp
Genome Size 5,457,488 bp
Protein Count 5,526
Coding Density 87.30%
GC Percentage 50.19%
Ambiguous Bases N/A
GTDB representative GCA_002949675.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM30331v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN00808717
Country USA
Date 2012-10-12
Genbank Assembly Accession GCA_000303315.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 6,012
Refseq Category na
Seq Rel Date 2012/10/12
Spanned Gaps 76
Species Taxid 562
SSU Count 2
Submitter Institute for Genome Sciences
Taxid 1005554
Total Gap Length 2812
Translation Table 11
tRNA Count (total) 96
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AMVG00000000.1