Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae; x__Vibrio cholerae HC-51A1
NCBI Strain Identifiers HC-51A1
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001471585.2)
Genome Characteristics
CheckM Completeness 99.63%
CheckM Contamination 0.05%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 2
23S Count 1
tRNA Count 17
Contig Count 249
N50 Contigs 43,377 bp
Longest Contig 139,332 bp
Scaffold Count 140
N50 Scaffolds 150,202 bp
Longest Scaffold 405,513 bp
Genome Size 3,929,843 bp
Protein Count 3,534
Coding Density 86.29%
GC Percentage 47.75%
Ambiguous Bases N/A
GTDB representative GCA_001471585.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM30310v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN00622042
Country Haiti
Date 2012-10-11
Genbank Assembly Accession GCA_000303105.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source stool
Latitude Longitude None
Molecule Count N/A
CDS Count 3,693
Refseq Category na
Seq Rel Date 2012/10/11
Spanned Gaps 109
Species Taxid 666
SSU Count 2
Submitter Institute for Genome Sciences
Taxid 992004
Total Gap Length 5488
Translation Table 11
tRNA Count (total) 66
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master ALDT00000000.1