Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae; x__Vibrio cholerae CP1040(13)
NCBI Strain Identifiers CP1040(13)
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001471585.2)
Genome Characteristics
CheckM Completeness 99.26%
CheckM Contamination 0.03%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 16
Contig Count 226
N50 Contigs 47,614 bp
Longest Contig 130,387 bp
Scaffold Count 105
N50 Scaffolds 197,795 bp
Longest Scaffold 536,978 bp
Genome Size 4,033,944 bp
Protein Count 3,597
Coding Density 86.36%
GC Percentage 47.48%
Ambiguous Bases N/A
GTDB representative GCA_001471585.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM30298v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN00622026
Country Zambia
Date 2012-10-11
Genbank Assembly Accession GCA_000302985.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source stool
Latitude Longitude None
Molecule Count N/A
CDS Count 3,791
Refseq Category na
Seq Rel Date 2012/10/11
Spanned Gaps 121
Species Taxid 666
SSU Count 1
Submitter Institute for Genome Sciences
Taxid 991993
Total Gap Length 6929
Translation Table 11
tRNA Count (total) 63
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master ALDD00000000.1