Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae; x__Vibrio cholerae CP1037(10)
NCBI Strain Identifiers CP1037(10)
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001471585.2)
Genome Characteristics
CheckM Completeness 99.84%
CheckM Contamination 0.03%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 3
23S Count 1
tRNA Count 19
Contig Count 175
N50 Contigs 60,567 bp
Longest Contig 147,171 bp
Scaffold Count 78
N50 Scaffolds 174,609 bp
Longest Scaffold 370,255 bp
Genome Size 3,922,570 bp
Protein Count 3,476
Coding Density 86.87%
GC Percentage 47.64%
Ambiguous Bases N/A
GTDB representative GCA_001471585.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM30296v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN00622034
Country Mexico
Date 2012-10-11
Genbank Assembly Accession GCA_000302965.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source stool
Latitude Longitude None
Molecule Count N/A
CDS Count 3,626
Refseq Category na
Seq Rel Date 2012/10/11
Spanned Gaps 97
Species Taxid 666
SSU Count 3
Submitter Institute for Genome Sciences
Taxid 991992
Total Gap Length 6390
Translation Table 11
tRNA Count (total) 70
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master ALDB00000000.1