Lactococcus garvieae_A
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Lactococcus; s__Lactococcus garvieae_A
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Lactococcus; s__Lactococcus garvieae
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Lactococcus; s__Lactococcus garvieae; x__Lactococcus garvieae DCC43
NCBI Strain Identifiers DCC43
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002077975.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.57%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 67
N50 Contigs 75,751 bp
Longest Contig 178,922 bp
Scaffold Count 67
N50 Scaffolds 75,751 bp
Longest Scaffold 178,922 bp
Genome Size 2,239,001 bp
Protein Count 2,252
Coding Density 88.74%
GC Percentage 37.83%
Ambiguous Bases N/A
GTDB representative GCA_002077975.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name LgDCC43_1.0
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02470721
Country None
Date 2012-10-1
Genbank Assembly Accession GCA_000300795.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Mallard duck intestines
Latitude Longitude None
Molecule Count N/A
CDS Count 2,214
Refseq Category na
Seq Rel Date 2012/10/01
Spanned Gaps 0
Species Taxid 1363
SSU Count 1
Submitter Norwegian University of Life Sciences
Taxid 1231377
Total Gap Length 0
Translation Table 11
tRNA Count (total) 49
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AMQS00000000.1