HIMB59 sp000299115
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__HIMB59; f__HIMB59; g__HIMB59; s__HIMB59 sp000299115
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Pelagibacterales; f__Pelagibacteraceae; g__; s__
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Pelagibacterales; f__Pelagibacteraceae; x__unclassified Pelagibacteraceae; s__alpha proteobacterium HIMB59
NCBI Strain Identifiers HIMB59
GTDB Type Material Designation not type material
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 95.78%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 1
N50 Contigs 1,410,127 bp
Longest Contig 1,410,127 bp
Scaffold Count 1
N50 Scaffolds 1,410,127 bp
Longest Scaffold 1,410,127 bp
Genome Size 1,410,127 bp
Protein Count 1,493
Coding Density 96.28%
GC Percentage 32.26%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Complete Genome
Assembly Name ASM29911v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN00010387
Country None
Date 2012-9-24
Genbank Assembly Accession GCA_000299115.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count 1
CDS Count 1,485
Refseq Category na
Seq Rel Date 2012/09/24
Spanned Gaps 0
Species Taxid 744985
SSU Count 1
Submitter Gordon and Betty Moore Foundation Marine Microbiology Initiative
Taxid 744985
Total Gap Length 0
Translation Table 11
tRNA Count (total) 35
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master None