Streptomyces harbinensis
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Streptomycetales; f__Streptomycetaceae; g__Streptomyces; s__Streptomyces harbinensis
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Streptomycetales; f__Streptomycetaceae; g__Streptomyces; s__
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Streptomycetales; f__Streptomycetaceae; g__Streptomyces; s__Streptomyces sp. AA0539
NCBI Strain Identifiers AA0539
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_900116145.1)
Genome Characteristics
CheckM Completeness 95.82%
CheckM Contamination 0.88%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 57
N50 Contigs 178,777 bp
Longest Contig 497,871 bp
Scaffold Count 57
N50 Scaffolds 178,777 bp
Longest Scaffold 497,871 bp
Genome Size 5,768,564 bp
Protein Count 5,179
Coding Density 89.98%
GC Percentage 72.92%
Ambiguous Bases N/A
GTDB representative GCA_900116145.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM29763v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02470042
Country China: Yellow Sea
Date 2012-09-17
Genbank Assembly Accession GCA_000297635.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source marine sediment sample taken at a water depth of 50 meters
Latitude Longitude 35.2347 N 119.9281 E
Molecule Count N/A
CDS Count 5,150
Refseq Category na
Seq Rel Date 2012/09/17
Spanned Gaps 0
Species Taxid 1210045
SSU Count 1
Submitter Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences
Taxid 1210045
Total Gap Length 0
Translation Table 11
tRNA Count (total) 57
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master ALNP00000000.1