Micromonospora lupini
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Micromonosporaceae; g__Micromonospora; s__Micromonospora lupini
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Micromonosporales; f__Micromonosporaceae; g__Micromonospora; s__Micromonospora lupini
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Micromonosporales; f__Micromonosporaceae; g__Micromonospora; s__Micromonospora lupini; x__Micromonospora lupini str. Lupac 08
NCBI Strain Identifiers Lupac 08
GTDB Type Material Designation not type material
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 99.82%
CheckM Contamination 1.58%
CheckM Strain Heterogeneity 25.0
5S Count 3
16S Count 4
23S Count 3
tRNA Count 20
Contig Count 50
N50 Contigs 271,488 bp
Longest Contig 913,282 bp
Scaffold Count 4
N50 Scaffolds 7,082,520 bp
Longest Scaffold 7,082,520 bp
Genome Size 7,325,824 bp
Protein Count 6,695
Coding Density 88.81%
GC Percentage 71.96%
Ambiguous Bases 3
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM29739v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA3138422
Country None
Date 2013-1-10
Genbank Assembly Accession GCA_000297395.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 6,667
Refseq Category representative genome
Seq Rel Date 2013/01/10
Spanned Gaps 46
Species Taxid 285679
SSU Count 4
Submitter Universidad de Salamanca
Taxid 1150864
Total Gap Length 4600
Translation Table 11
tRNA Count (total) 77
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CAIE00000000.1