Escherichia coli_D
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli_D
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli EC302/04
NCBI Strain Identifiers EC302;EC302/04;04
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000026325.2)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.09%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 82
N50 Contigs 201,460 bp
Longest Contig 350,759 bp
Scaffold Count 82
N50 Scaffolds 201,460 bp
Longest Scaffold 350,759 bp
Genome Size 4,984,414 bp
Protein Count 4,663
Coding Density 88.65%
GC Percentage 50.76%
Ambiguous Bases N/A
GTDB representative GCA_000026325.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name EC302/04.1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02469950
Country Malaysia
Date 2016-3-11
Genbank Assembly Accession GCA_000297235.3
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source tracheal aspirate
Latitude Longitude None
Molecule Count 1
CDS Count 5,072
Refseq Category na
Seq Rel Date 2016/03/11
Spanned Gaps 0
Species Taxid 562
SSU Count 1
Submitter Institute of Biological Science
Taxid 1230480
Total Gap Length 0
Translation Table 11
tRNA Count (total) 69
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AMFM00000000.1