Pasteurella multocida
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Pasteurellaceae; g__Pasteurella; s__Pasteurella multocida
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pasteurellales; f__Pasteurellaceae; g__Pasteurella; s__Pasteurella multocida
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pasteurellales; f__Pasteurellaceae; g__Pasteurella; s__Pasteurella multocida; sb__Pasteurella multocida subsp. multocida; x__Pasteurella multocida subsp. multocida VTCCBAA264
NCBI Strain Identifiers VTCCBAA264
GTDB Type Material Designation not type material
GTDB Representative of Species False
Genome Characteristics
CheckM Completeness 99.2%
CheckM Contamination 0.23%
CheckM Strain Heterogeneity 100.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 18
Contig Count 78
N50 Contigs 65,447 bp
Longest Contig 319,560 bp
Scaffold Count 78
N50 Scaffolds 65,447 bp
Longest Scaffold 319,560 bp
Genome Size 2,280,332 bp
Protein Count 2,205
Coding Density 89.55%
GC Percentage 40.47%
Ambiguous Bases 0
GTDB representative GCF_000754275.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM29634v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02470650
Country India:Haryana; Hisar
Date 2014-6-19
Genbank Assembly Accession GCA_000296345.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source small intestine of buffalo calf with hemorrhagic septicemia
Latitude Longitude None
Molecule Count 0
Protein Count 2,134
Refseq Category na
Seq Rel Date 2014/06/19
Spanned Gaps 0
Species Taxid 747
SSU Count 1
Submitter Veterinary Type Culture Collection, NRCE, Sirsa Road, Hisar
Taxid 1161102
Total Gap Length 0
Translation Table 11
tRNA Count (total) 43
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master ALYC00000000.2