Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Campylobacterota; c__Campylobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__Helicobacter pylori
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Epsilonproteobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__Helicobacter pylori
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; x__delta/epsilon subdivisions; c__Epsilonproteobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__Helicobacter pylori; x__Helicobacter pylori FD719
NCBI Strain Identifiers FD719
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_900478295.1)
Genome Characteristics
CheckM Completeness 99.35%
CheckM Contamination 0.18%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 4
23S Count 4
tRNA Count 20
Contig Count 79
N50 Contigs 37,275 bp
Longest Contig 127,232 bp
Scaffold Count 79
N50 Scaffolds 37,275 bp
Longest Scaffold 127,232 bp
Genome Size 1,642,171 bp
Protein Count 1,614
Coding Density 90.96%
GC Percentage 39.10%
Ambiguous Bases 27
GTDB representative GCA_900478295.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name FD719
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN00996399
Country Malaysia: Kuala Lumpur
Date 2013-08-21
Genbank Assembly Accession GCA_000296115.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Gastric biopsies
Latitude Longitude None
Molecule Count N/A
CDS Count 1,621
Refseq Category na
Seq Rel Date 2013/08/21
Spanned Gaps 0
Species Taxid 210
SSU Count 4
Submitter University of Malaya-Malaysian Genomics Resource Centre Berhad-University of New South Wales
Taxid 1191286
Total Gap Length 0
Translation Table 11
tRNA Count (total) 36
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AKHU00000000.2