Helicobacter pylori_C
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Campylobacterota; c__Campylobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__Helicobacter pylori_C
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Epsilonproteobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__Helicobacter pylori
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; x__delta/epsilon subdivisions; c__Epsilonproteobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__Helicobacter pylori; x__Helicobacter pylori FD577
NCBI Strain Identifiers FD577
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000277405.1)
Genome Characteristics
CheckM Completeness 99.42%
CheckM Contamination 0.26%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 4
23S Count 4
tRNA Count 20
Contig Count 74
N50 Contigs 45,388 bp
Longest Contig 128,943 bp
Scaffold Count 74
N50 Scaffolds 45,388 bp
Longest Scaffold 128,943 bp
Genome Size 1,625,905 bp
Protein Count 1,601
Coding Density 90.50%
GC Percentage 38.67%
Ambiguous Bases 23
GTDB representative GCA_000277405.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name FD577
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN00996396
Country Malaysia: Kuala Lumpur
Date 2013-08-21
Genbank Assembly Accession GCA_000296055.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Gastric biopsies
Latitude Longitude None
Molecule Count N/A
CDS Count 1,585
Refseq Category na
Seq Rel Date 2013/08/21
Spanned Gaps 0
Species Taxid 210
SSU Count 4
Submitter University of Malaya-Malaysian Genomics Resource Centre Berhad-University of New South Wales
Taxid 1191283
Total Gap Length 0
Translation Table 11
tRNA Count (total) 36
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AKHR00000000.2