Virgibacillus halodenitrificans
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Bacillales; f__Amphibacillaceae; g__Virgibacillus; s__Virgibacillus halodenitrificans
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Bacillales; f__Bacillaceae; g__Virgibacillus; s__Virgibacillus halodenitrificans
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Bacillales; f__Bacillaceae; g__Virgibacillus; s__Virgibacillus halodenitrificans; x__Virgibacillus halodenitrificans 1806
NCBI Strain Identifiers 1806
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001310895.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.22%
CheckM Strain Heterogeneity 0.0
5S Count 4
16S Count 1
23S Count 1
tRNA Count 18
Contig Count 92
N50 Contigs 79,346 bp
Longest Contig 230,247 bp
Scaffold Count 92
N50 Scaffolds 79,346 bp
Longest Scaffold 230,247 bp
Genome Size 3,920,549 bp
Protein Count 3,886
Coding Density 85.21%
GC Percentage 37.41%
Ambiguous Bases N/A
GTDB representative GCA_001310895.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name VH01
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02470180
Country South Korea
Date 2012-09-06
Genbank Assembly Accession GCA_000294755.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source seawater
Latitude Longitude None
Molecule Count N/A
CDS Count 3,827
Refseq Category na
Seq Rel Date 2012/09/06
Spanned Gaps 0
Species Taxid 1482
SSU Count 1
Submitter KRIBB
Taxid 1196028
Total Gap Length 0
Translation Table 11
tRNA Count (total) 46
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master ALEF00000000.1