Pseudomonas_E hunanensis
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E hunanensis
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas putida
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas putida group; s__Pseudomonas putida; x__Pseudomonas putida LS46
NCBI Strain Identifiers LS46
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003671955.1)
Genome Characteristics
CheckM Completeness 99.91%
CheckM Contamination 1.08%
CheckM Strain Heterogeneity 20.0
5S Count 7
16S Count 7
23S Count 5
tRNA Count 20
Contig Count 32
N50 Contigs 407,829 bp
Longest Contig 820,599 bp
Scaffold Count 32
N50 Scaffolds 407,829 bp
Longest Scaffold 820,599 bp
Genome Size 5,874,759 bp
Protein Count 5,239
Coding Density 88.65%
GC Percentage 61.69%
Ambiguous Bases 2
GTDB representative GCA_003671955.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM29444v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02471870
Country Canada
Date 2013-03-27
Genbank Assembly Accession GCA_000294445.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source waste water
Latitude Longitude None
Molecule Count N/A
CDS Count 5,364
Refseq Category na
Seq Rel Date 2013/03/27
Spanned Gaps 0
Species Taxid 303
SSU Count 8
Submitter University of Manitoba,
Taxid 1193146
Total Gap Length 0
Translation Table 11
tRNA Count (total) 76
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master ALPV00000000.2