Limnohabitans sp000293865
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales; f__Burkholderiaceae; g__Limnohabitans; s__Limnohabitans sp000293865
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Comamonadaceae; g__Limnohabitans; s__
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Comamonadaceae; g__Limnohabitans; s__Limnohabitans sp. Rim28
NCBI Strain Identifiers Rim28
GTDB Type Material Designation not type material
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 99.94%
CheckM Contamination 0.93%
CheckM Strain Heterogeneity 50.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 67
N50 Contigs 230,656 bp
Longest Contig 529,381 bp
Scaffold Count 67
N50 Scaffolds 230,656 bp
Longest Scaffold 529,381 bp
Genome Size 3,407,253 bp
Protein Count 3,357
Coding Density 92.21%
GC Percentage 58.52%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name ASM29386v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02470021
Country Czech Republic
Date 2018-04-28
Genbank Assembly Accession GCA_000293865.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source water from Rimov reservoir
Latitude Longitude 48.833 N 14.483 E
Molecule Count N/A
CDS Count 3,324
Refseq Category na
Seq Rel Date 2018/04/28
Spanned Gaps 0
Species Taxid 1100720
SSU Count 1
Submitter Institute of Microbiology, Academy of Sciences, Czech Republic
Taxid 1100720
Total Gap Length 0
Translation Table 11
tRNA Count (total) 40
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master ALKN00000000.2