Helicobacter pylori_C
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Campylobacterota; c__Campylobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__Helicobacter pylori_C
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Epsilonproteobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__Helicobacter pylori
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; x__delta/epsilon subdivisions; c__Epsilonproteobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__Helicobacter pylori; x__Helicobacter pylori HLJHP193
NCBI Strain Identifiers HLJHP193
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000277405.1)
Genome Characteristics
CheckM Completeness 99.42%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 55
N50 Contigs 66,297 bp
Longest Contig 147,714 bp
Scaffold Count 10
N50 Scaffolds 970,042 bp
Longest Scaffold 970,042 bp
Genome Size 1,569,327 bp
Protein Count 1,496
Coding Density 89.54%
GC Percentage 38.91%
Ambiguous Bases N/A
GTDB representative GCA_000277405.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM28783v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02469498
Country China
Date 2013-02-22
Genbank Assembly Accession GCA_000287835.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source gastric mucosa
Latitude Longitude None
Molecule Count N/A
CDS Count 1,525
Refseq Category na
Seq Rel Date 2013/02/22
Spanned Gaps 45
Species Taxid 210
SSU Count 1
Submitter BGI-shenzhen
Taxid 1213457
Total Gap Length 17005
Translation Table 11
tRNA Count (total) 36
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master ALJI00000000.1