Streptococcus sp001556435
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus sp001556435
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus salivarius
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus salivarius; x__Streptococcus salivarius K12
NCBI Strain Identifiers K12
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001556435.1)
Genome Characteristics
CheckM Completeness 99.39%
CheckM Contamination 4.13%
CheckM Strain Heterogeneity 82.86
5S Count 7
16S Count 7
23S Count 7
tRNA Count 20
Contig Count 7
N50 Contigs 1,489,429 bp
Longest Contig 1,489,429 bp
Scaffold Count 7
N50 Scaffolds 1,489,429 bp
Longest Scaffold 1,489,429 bp
Genome Size 2,426,359 bp
Protein Count 2,218
Coding Density 86.88%
GC Percentage 39.52%
Ambiguous Bases 61
GTDB representative GCA_001556435.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name SsalK12v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02470675
Country None
Date 2012-08-10
Genbank Assembly Accession GCA_000286295.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source saliva from healthy child
Latitude Longitude None
Molecule Count 1
CDS Count 2,214
Refseq Category na
Seq Rel Date 2012/08/10
Spanned Gaps 0
Species Taxid 1304
SSU Count 7
Submitter Nestle Research Center
Taxid 1200793
Total Gap Length 0
Translation Table 11
tRNA Count (total) 59
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master ALIF00000000.1