Pantoea ludwigii_B
Isolate HQ 5S/16S/23S 17 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Pantoea; s__Pantoea ludwigii_B
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Erwiniaceae; g__Pantoea; s__
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Erwiniaceae; g__Pantoea; s__Pantoea sp. YR343
NCBI Strain Identifiers YR343
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_900068835.1)
Genome Characteristics
CheckM Completeness 99.84%
CheckM Contamination 0.66%
CheckM Strain Heterogeneity 16.67
5S Count 1
16S Count 1
23S Count 2
tRNA Count 17
Contig Count 128
N50 Contigs 94,033 bp
Longest Contig 269,790 bp
Scaffold Count 128
N50 Scaffolds 94,033 bp
Longest Scaffold 269,790 bp
Genome Size 5,314,049 bp
Protein Count 4,865
Coding Density 89.40%
GC Percentage 54.51%
Ambiguous Bases N/A
GTDB representative GCA_900068835.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name Pantoea.strYR343_v1.0
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN00839652
Country USA: North Carolina
Date 2012-07-27
Genbank Assembly Accession GCA_000282695.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source root
Latitude Longitude None
Molecule Count N/A
CDS Count 4,838
Refseq Category na
Seq Rel Date 2012/07/27
Spanned Gaps 0
Species Taxid 1144341
SSU Count 1
Submitter Oak Ridge National Lab
Taxid 1144341
Total Gap Length 0
Translation Table 11
tRNA Count (total) 43
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AKIT00000000.1