Streptomyces sioyaensis
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Streptomycetales; f__Streptomycetaceae; g__Streptomyces; s__Streptomyces sioyaensis
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Streptomycetales; f__Streptomycetaceae; g__Streptomyces; s__Streptomyces auratus
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Streptomycetales; f__Streptomycetaceae; g__Streptomyces; s__Streptomyces auratus; x__Streptomyces auratus AGR0001
NCBI Strain Identifiers AGR0001
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_004122735.1)
Genome Characteristics
CheckM Completeness 99.91%
CheckM Contamination 0.52%
CheckM Strain Heterogeneity 0.0
5S Count 6
16S Count 1
23S Count 2
tRNA Count 20
Contig Count 238
N50 Contigs 58,883 bp
Longest Contig 208,558 bp
Scaffold Count 19
N50 Scaffolds 5,530,280 bp
Longest Scaffold 5,530,280 bp
Genome Size 7,885,420 bp
Protein Count 6,761
Coding Density 85.16%
GC Percentage 71.45%
Ambiguous Bases N/A
GTDB representative GCA_004122735.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM28086v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02472162
Country China: Yunnan
Date 2012-07-30
Genbank Assembly Accession GCA_000280865.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source soil
Latitude Longitude None
Molecule Count N/A
CDS Count 6,782
Refseq Category representative genome
Seq Rel Date 2012/07/30
Spanned Gaps 219
Species Taxid 114687
SSU Count 1
Submitter Yunnan Institution of Microbiology, Yunnan University
Taxid 1160718
Total Gap Length 39662
Translation Table 11
tRNA Count (total) 67
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AJGV00000000.1