Streptococcus pneumoniae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae; x__Streptococcus pneumoniae GA19998
NCBI Strain Identifiers GA19998
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457635.1)
Genome Characteristics
CheckM Completeness 99.6%
CheckM Contamination 0.63%
CheckM Strain Heterogeneity 85.71
5S Count 3
16S Count 7
23S Count 7
tRNA Count 20
Contig Count 7
N50 Contigs 627,889 bp
Longest Contig 888,452 bp
Scaffold Count 7
N50 Scaffolds 627,889 bp
Longest Scaffold 888,452 bp
Genome Size 2,137,965 bp
Protein Count 2,131
Coding Density 84.68%
GC Percentage 39.76%
Ambiguous Bases N/A
GTDB representative GCA_001457635.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM27983v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN00792350
Country None
Date 2012-07-18
Genbank Assembly Accession GCA_000279835.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 2,244
Refseq Category na
Seq Rel Date 2012/07/18
Spanned Gaps 0
Species Taxid 1313
SSU Count 7
Submitter Institute for Genome Sciences
Taxid 760802
Total Gap Length 0
Translation Table 11
tRNA Count (total) 63
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master ALCS00000000.1