Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae; x__Vibrio cholerae HC-20A2
NCBI Strain Identifiers HC-20A2
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001471585.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.03%
CheckM Strain Heterogeneity 0.0
5S Count 6
16S Count 8
23S Count 10
tRNA Count 20
Contig Count 27
N50 Contigs 413,813 bp
Longest Contig 1,196,456 bp
Scaffold Count 27
N50 Scaffolds 413,813 bp
Longest Scaffold 1,196,456 bp
Genome Size 4,084,542 bp
Protein Count 3,609
Coding Density 86.95%
GC Percentage 47.50%
Ambiguous Bases N/A
GTDB representative GCA_001471585.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM27941v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02435820
Country Haiti
Date 2012-07-18
Genbank Assembly Accession GCA_000279415.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source stool
Latitude Longitude None
Molecule Count N/A
CDS Count 3,806
Refseq Category na
Seq Rel Date 2012/07/18
Spanned Gaps 0
Species Taxid 666
SSU Count 8
Submitter Institute for Genome Sciences
Taxid 991932
Total Gap Length 0
Translation Table 11
tRNA Count (total) 99
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master ALDL00000000.1