Helicobacter pylori_C
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Campylobacterota; c__Campylobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__Helicobacter pylori_C
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Epsilonproteobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__Helicobacter pylori
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; x__delta/epsilon subdivisions; c__Epsilonproteobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__Helicobacter pylori; x__Helicobacter pylori Shi112
NCBI Strain Identifiers Shi112
GTDB Type Material Designation not type material
GTDB Representative of Species True (246 genomes in species cluster)
Genome Characteristics
CheckM Completeness 99.62%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 2
23S Count 2
tRNA Count 20
Contig Count 1
N50 Contigs 1,663,456 bp
Longest Contig 1,663,456 bp
Scaffold Count 1
N50 Scaffolds 1,663,456 bp
Longest Scaffold 1,663,456 bp
Genome Size 1,663,456 bp
Protein Count 1,561
Coding Density 91.33%
GC Percentage 38.77%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Complete Genome
Assembly Name ASM27740v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02603194
Country Peru: Amazonian viillage of Shimaa
Date 2012-4-19
Genbank Assembly Accession GCA_000277405.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source gastric antrum of Amerindian resident
Latitude Longitude None
Molecule Count 1
CDS Count 1,590
Refseq Category na
Seq Rel Date 2012/04/19
Spanned Gaps 0
Species Taxid 210
SSU Count 2
Submitter Dept. Molec. Microbiology, Washington University Medical School in Saint Louis
Taxid 1163740
Total Gap Length 0
Translation Table 11
tRNA Count (total) 36
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master None