Pseudomonas_E amygdali
Isolate HQ 16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E amygdali
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas amygdali
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas syringae group; x__Pseudomonas syringae group genomosp. 2; s__Pseudomonas amygdali; x__Pseudomonas amygdali pv. tabaci; x__Pseudomonas amygdali pv. tabaci str. 6605
NCBI Strain Identifiers 6605
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001400815.1)
Genome Characteristics
CheckM Completeness 99.84%
CheckM Contamination 0.28%
CheckM Strain Heterogeneity 25.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 283
N50 Contigs 64,341 bp
Longest Contig 222,375 bp
Scaffold Count 283
N50 Scaffolds 64,341 bp
Longest Scaffold 222,375 bp
Genome Size 6,159,286 bp
Protein Count 5,662
Coding Density 88.14%
GC Percentage 58.00%
Ambiguous Bases 18
GTDB representative GCA_001400815.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM27594v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02471736
Country Japan
Date 2012-07-09
Genbank Assembly Accession GCA_000275945.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,683
Refseq Category na
Seq Rel Date 2012/07/09
Spanned Gaps 0
Species Taxid 47877
SSU Count 1
Submitter University of Exeter
Taxid 1189622
Total Gap Length 0
Translation Table 11
tRNA Count (total) 50
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AJXI00000000.1