Pseudomonas_E sp002269425
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E sp002269425
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas fluorescens
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas fluorescens group; s__Pseudomonas fluorescens; x__Pseudomonas fluorescens NZ052
NCBI Strain Identifiers NZ052
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002269425.1)
Genome Characteristics
CheckM Completeness 99.88%
CheckM Contamination 0.58%
CheckM Strain Heterogeneity 37.5
5S Count 2
16S Count 1
23S Count 2
tRNA Count 20
Contig Count 440
N50 Contigs 99,562 bp
Longest Contig 415,705 bp
Scaffold Count 440
N50 Scaffolds 99,562 bp
Longest Scaffold 415,705 bp
Genome Size 6,827,647 bp
Protein Count 6,354
Coding Density 89.31%
GC Percentage 60.07%
Ambiguous Bases 14
GTDB representative GCA_002269425.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM27592v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02471725
Country New Zealand
Date 2012-07-09
Genbank Assembly Accession GCA_000275925.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source mushroom caps exhibiting blotch discolorations at a mushroom farm
Latitude Longitude None
Molecule Count N/A
CDS Count 6,362
Refseq Category na
Seq Rel Date 2012/07/09
Spanned Gaps 0
Species Taxid 294
SSU Count 1
Submitter The Sainsbury Laboratory
Taxid 564421
Total Gap Length 0
Translation Table 11
tRNA Count (total) 52
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AJXH00000000.1