Helicobacter pylori_BU
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Campylobacterota; c__Campylobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__Helicobacter pylori_BU
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Epsilonproteobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__Helicobacter pylori
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; x__delta/epsilon subdivisions; c__Epsilonproteobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__Helicobacter pylori; x__Helicobacter pylori Hp P-62
NCBI Strain Identifiers Hp P-62
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_900120335.1)
Genome Characteristics
CheckM Completeness 99.5%
CheckM Contamination 0.14%
CheckM Strain Heterogeneity 100.0
5S Count 0
16S Count 1
23S Count 3
tRNA Count 20
Contig Count 12
N50 Contigs 379,503 bp
Longest Contig 472,603 bp
Scaffold Count 12
N50 Scaffolds 379,503 bp
Longest Scaffold 472,603 bp
Genome Size 1,648,336 bp
Protein Count 1,533
Coding Density 90.07%
GC Percentage 39.13%
Ambiguous Bases 1
GTDB representative GCA_900120335.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM27544v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN00778916
Country None
Date 2012-6-28
Genbank Assembly Accession GCA_000275445.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 1,581
Refseq Category na
Seq Rel Date 2012/06/28
Spanned Gaps 0
Species Taxid 210
SSU Count 1
Submitter Institute for Genome Sciences
Taxid 992089
Total Gap Length 0
Translation Table 11
tRNA Count (total) 36
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AKPW00000000.1