Helicobacter pylori_C
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Campylobacterota; c__Campylobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__Helicobacter pylori_C
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Epsilonproteobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__Helicobacter pylori
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; x__delta/epsilon subdivisions; c__Epsilonproteobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__Helicobacter pylori; x__Helicobacter pylori CPY1124
NCBI Strain Identifiers CPY1124
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000277405.1)
Genome Characteristics
CheckM Completeness 99.42%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 3
23S Count 4
tRNA Count 20
Contig Count 12
N50 Contigs 375,689 bp
Longest Contig 467,829 bp
Scaffold Count 12
N50 Scaffolds 375,689 bp
Longest Scaffold 467,829 bp
Genome Size 1,560,199 bp
Protein Count 1,540
Coding Density 90.87%
GC Percentage 38.93%
Ambiguous Bases N/A
GTDB representative GCA_000277405.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM27522v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN00777116
Country Japan
Date 2012-6-28
Genbank Assembly Accession GCA_000275225.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 1,521
Refseq Category na
Seq Rel Date 2012/06/28
Spanned Gaps 0
Species Taxid 210
SSU Count 4
Submitter Institute for Genome Sciences
Taxid 992013
Total Gap Length 0
Translation Table 11
tRNA Count (total) 37
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AKNJ00000000.1