Helicobacter pylori_BU
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Campylobacterota; c__Campylobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__Helicobacter pylori_BU
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Epsilonproteobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__Helicobacter pylori
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; x__delta/epsilon subdivisions; c__Epsilonproteobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__Helicobacter pylori; x__Helicobacter pylori Hp M1
NCBI Strain Identifiers Hp M1
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_900120335.1)
Genome Characteristics
CheckM Completeness 99.36%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 4
tRNA Count 20
Contig Count 8
N50 Contigs 431,724 bp
Longest Contig 801,847 bp
Scaffold Count 8
N50 Scaffolds 431,724 bp
Longest Scaffold 801,847 bp
Genome Size 1,655,299 bp
Protein Count 1,560
Coding Density 90.77%
GC Percentage 39.13%
Ambiguous Bases N/A
GTDB representative GCA_900120335.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM27496v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN01818776
Country USA:Ohio; Cleveland
Date 2012-6-28
Genbank Assembly Accession GCA_000274965.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source mucus [ENVO:02000040]
Latitude Longitude 41.4994 N 81.6956 W
Molecule Count N/A
CDS Count 1,595
Refseq Category na
Seq Rel Date 2012/06/28
Spanned Gaps 0
Species Taxid 210
SSU Count 1
Submitter Institute for Genome Sciences
Taxid 992117
Total Gap Length 0
Translation Table 11
tRNA Count (total) 36
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AKQN00000000.1