Salmonella enterica
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica; sb__Salmonella enterica subsp. enterica; x__Salmonella enterica subsp. enterica serovar Newport; x__Salmonella enterica subsp. enterica serovar Newport str. CVM 19567
NCBI Strain Identifiers CVM 19567
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000006945.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.04%
CheckM Strain Heterogeneity 0.0
5S Count 6
16S Count 1
23S Count 3
tRNA Count 20
Contig Count 40
N50 Contigs 417,793 bp
Longest Contig 664,011 bp
Scaffold Count 40
N50 Scaffolds 417,793 bp
Longest Scaffold 664,011 bp
Genome Size 4,663,844 bp
Protein Count 4,352
Coding Density 87.78%
GC Percentage 52.18%
Ambiguous Bases N/A
GTDB representative GCA_000006945.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM27259v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN00811536
Country Viet Nam
Date 2012-06-25
Genbank Assembly Accession GCA_000272595.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source fish food
Latitude Longitude None
Molecule Count N/A
CDS Count 4,666
Refseq Category na
Seq Rel Date 2012/06/25
Spanned Gaps 0
Species Taxid 28901
SSU Count 1
Submitter FDA
Taxid 796735
Total Gap Length 0
Translation Table 11
tRNA Count (total) 67
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AHTR00000000.1