Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio splendidus
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio splendidus
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio splendidus; x__Vibrio splendidus FF-6
NCBI Strain Identifiers FF-6
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001558015.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.87%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 3
23S Count 4
tRNA Count 10
Contig Count 382
N50 Contigs 37,895 bp
Longest Contig 176,041 bp
Scaffold Count 340
N50 Scaffolds 42,279 bp
Longest Scaffold 221,807 bp
Genome Size 5,639,868 bp
Protein Count 5,181
Coding Density 85.85%
GC Percentage 44.12%
Ambiguous Bases N/A
GTDB representative GCA_001558015.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM27232v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02470457
Country USA: Massachusetts
Date 2016-9-16
Genbank Assembly Accession GCA_000272325.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source filtered seawater (<1um filter)
Latitude Longitude None
Molecule Count N/A
CDS Count 5,089
Refseq Category na
Seq Rel Date 2016/09/16
Spanned Gaps 42
Species Taxid 29497
SSU Count 3
Submitter Broad Institute
Taxid 617146
Total Gap Length 472
Translation Table 11
tRNA Count (total) 15
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AJZI00000000.2