Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio splendidus
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio splendidus
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio splendidus; x__Vibrio splendidus 1S-124
NCBI Strain Identifiers 1S-124
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001558015.1)
Genome Characteristics
CheckM Completeness 99.96%
CheckM Contamination 0.63%
CheckM Strain Heterogeneity 16.67
5S Count 1
16S Count 2
23S Count 3
tRNA Count 11
Contig Count 340
N50 Contigs 30,445 bp
Longest Contig 114,987 bp
Scaffold Count 313
N50 Scaffolds 34,264 bp
Longest Scaffold 138,985 bp
Genome Size 5,272,753 bp
Protein Count 4,711
Coding Density 85.88%
GC Percentage 44.18%
Ambiguous Bases N/A
GTDB representative GCA_001558015.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM27230v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02470502
Country USA: Massachusetts
Date 2016-09-16
Genbank Assembly Accession GCA_000272305.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source filtered seawater (1um filter)
Latitude Longitude None
Molecule Count N/A
CDS Count 4,677
Refseq Category na
Seq Rel Date 2016/09/16
Spanned Gaps 27
Species Taxid 29497
SSU Count 2
Submitter Broad Institute
Taxid 1191313
Total Gap Length 322
Translation Table 11
tRNA Count (total) 16
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AJZL00000000.2