Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio splendidus
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio splendidus
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio splendidus; x__Vibrio splendidus FF-500
NCBI Strain Identifiers FF-500
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001558015.1)
Genome Characteristics
CheckM Completeness 99.64%
CheckM Contamination 0.32%
CheckM Strain Heterogeneity 0.0
5S Count 5
16S Count 5
23S Count 6
tRNA Count 19
Contig Count 167
N50 Contigs 148,698 bp
Longest Contig 400,455 bp
Scaffold Count 58
N50 Scaffolds 3,201,784 bp
Longest Scaffold 3,201,784 bp
Genome Size 5,858,828 bp
Protein Count 5,158
Coding Density 83.89%
GC Percentage 44.12%
Ambiguous Bases N/A
GTDB representative GCA_001558015.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM27226v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02470478
Country USA: Massachusetts
Date 2016-09-16
Genbank Assembly Accession GCA_000272265.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source filtered seawater (<1um filter)
Latitude Longitude None
Molecule Count N/A
CDS Count 5,164
Refseq Category na
Seq Rel Date 2016/09/16
Spanned Gaps 109
Species Taxid 29497
SSU Count 5
Submitter Broad Institute
Taxid 1191309
Total Gap Length 63788
Translation Table 11
tRNA Count (total) 86
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AJZH00000000.2