Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio kanaloae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio kanaloae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio kanaloae; x__Vibrio kanaloae 5S-149
NCBI Strain Identifiers 5S-149
GTDB Type Material Designation not type material
GTDB Representative of Species True (11 genomes in species cluster)
Genome Characteristics
CheckM Completeness 99.85%
CheckM Contamination 1.22%
CheckM Strain Heterogeneity 11.11
5S Count 3
16S Count 4
23S Count 2
tRNA Count 20
Contig Count 150
N50 Contigs 169,853 bp
Longest Contig 353,079 bp
Scaffold Count 50
N50 Scaffolds 2,639,559 bp
Longest Scaffold 2,639,559 bp
Genome Size 4,701,086 bp
Protein Count 4,124
Coding Density 84.42%
GC Percentage 43.76%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM27216v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02470441
Country USA: Massachusetts
Date 2016-9-16
Genbank Assembly Accession GCA_000272165.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source filtered seawater (5um filter)
Latitude Longitude None
Molecule Count N/A
CDS Count 4,146
Refseq Category na
Seq Rel Date 2016/09/16
Spanned Gaps 100
Species Taxid 170673
SSU Count 4
Submitter Broad Institute
Taxid 1191299
Total Gap Length 33633
Translation Table 11
tRNA Count (total) 74
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AJYX00000000.2