Pseudomonas aeruginosa
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas aeruginosa group; s__Pseudomonas aeruginosa; x__Pseudomonas aeruginosa SJTD-1
NCBI Strain Identifiers SJTD-1
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457615.1)
Genome Characteristics
CheckM Completeness 99.68%
CheckM Contamination 0.22%
CheckM Strain Heterogeneity 0.0
5S Count 4
16S Count 4
23S Count 4
tRNA Count 20
Contig Count 1
N50 Contigs 6,243,825 bp
Longest Contig 6,243,825 bp
Scaffold Count 1
N50 Scaffolds 6,243,825 bp
Longest Scaffold 6,243,825 bp
Genome Size 6,243,825 bp
Protein Count 5,650
Coding Density 89.69%
GC Percentage 66.50%
Ambiguous Bases N/A
GTDB representative GCA_001457615.1
GTDB representative of species False
NCBI Metadata
Assembly Level Complete Genome
Assembly Name ASM27198v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02470939
Country China: Shanghai
Date 2016-6-2
Genbank Assembly Accession GCA_000271985.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source soil
Latitude Longitude None
Molecule Count 1
CDS Count 5,784
Refseq Category na
Seq Rel Date 2016/06/02
Spanned Gaps 0
Species Taxid 287
SSU Count 4
Submitter Shanghai Jiao Tong University
Taxid 1193501
Total Gap Length 0
Translation Table 11
tRNA Count (total) 63
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master None