Bacteroides fragilis
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Bacteroidales; f__Bacteroidaceae; g__Bacteroides; s__Bacteroides fragilis
Filtered NCBI Taxonomy d__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Bacteroidaceae; g__Bacteroides; s__Bacteroides fragilis
Unfiltered NCBI Taxonomy d__Bacteria; x__FCB group; x__Bacteroidetes/Chlorobi group; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Bacteroidaceae; g__Bacteroides; s__Bacteroides fragilis; x__Bacteroides fragilis CL05T00C42
NCBI Strain Identifiers CL05T00C42
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000025985.1)
Genome Characteristics
CheckM Completeness 99.26%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 6
16S Count 7
23S Count 6
tRNA Count 20
Contig Count 12
N50 Contigs 1,275,491 bp
Longest Contig 1,406,492 bp
Scaffold Count 12
N50 Scaffolds 1,275,491 bp
Longest Scaffold 1,406,492 bp
Genome Size 5,300,647 bp
Protein Count 4,427
Coding Density 88.98%
GC Percentage 43.49%
Ambiguous Bases N/A
GTDB representative GCA_000025985.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name PB_Bact_frag_CL05T00C42_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02463923
Country None
Date 2012-06-15
Genbank Assembly Accession GCA_000269525.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source biological product [ENVO:02000043]
Latitude Longitude None
Molecule Count N/A
CDS Count 4,692
Refseq Category na
Seq Rel Date 2012/06/15
Spanned Gaps 0
Species Taxid 817
SSU Count 7
Submitter Broad Institute
Taxid 997880
Total Gap Length 0
Translation Table 11
tRNA Count (total) 72
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AKBY00000000.1