Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Yersinia; s__Yersinia pestis
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Yersiniaceae; g__Yersinia; s__Yersinia pestis
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Yersiniaceae; g__Yersinia; x__Yersinia pseudotuberculosis complex; s__Yersinia pestis; x__Yersinia pestis PY-46
NCBI Strain Identifiers PY-46
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_900460465.1)
Genome Characteristics
CheckM Completeness 99.65%
CheckM Contamination 1.47%
CheckM Strain Heterogeneity 30.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 460
N50 Contigs 18,791 bp
Longest Contig 59,563 bp
Scaffold Count 460
N50 Scaffolds 18,791 bp
Longest Scaffold 59,563 bp
Genome Size 4,674,925 bp
Protein Count 4,401
Coding Density 83.72%
GC Percentage 47.49%
Ambiguous Bases N/A
GTDB representative GCA_900460465.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM26930v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02141472
Country Peru:Ascope; San Antonio
Date 2012-06-15
Genbank Assembly Accession GCA_000269305.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source blood [ENVO:02000020]
Latitude Longitude None
Molecule Count N/A
CDS Count 4,556
Refseq Category na
Seq Rel Date 2012/06/15
Spanned Gaps 0
Species Taxid 632
SSU Count 1
Submitter Institute for Genome Sciences
Taxid 992151
Total Gap Length 0
Translation Table 11
tRNA Count (total) 61
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AKSK00000000.1